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The National Genomic Test Directories specify which genomic tests are commissioned by the NHS in England, to be delivered by Genomic Laboratory Hubs.

Clinical Indication ID & Name

R27

Paediatric Disorders

Test Group

Core

Test code

R27.3

Test name

N/A

Target genes

Paediatric disorders (486)

Test scope

n/a

Test method/ technology

WGS

Optimal Family Structure

n/a

Eligibility Criteria

• Congenital malformations and/or dysmorphism highly suggestive of an underlying monogenic disorder where targeted genetic testing is not possible.
• Unexplained moderate/severe/profound global developmental delay or unexplained moderate/severe/profound intellectual disability, and where clinical features are highly suggestive of an underlying monogenic disorder requiring sequencing and targeted genetic testing is not possible.
• Craniofacial dysmorphism in combination with additional issues with health or development suggestive of a single genomic explanation, e.g. intellectual disability, congenital malformation, organ dysfunction.
• Syndromic overgrowth or overgrowth in combination with intellectual disability or developmental delay.
• Adults with congenital malformation and dysmorphism syndromes, however the clinical utility of testing should be made clear on the request form e.g. to inform a clinical management decision or reproductive choice.
• Fetus from a demised/non-continued pregnancy, with multiple major structural abnormalities detected on fetal ultrasound or post-mortem examination and where a monogenic malformation disorder is considered highly likely
• Unexplained epilepsy with clinical suspicion of a monogenic cause including onset under 2 years, OR clinical features suggestive of specific genetic epilepsy, for example Dravet syndrome.

Exclusion criteria
• Isolated Congenital Heart Disease and other isolated congenital malformations where the likelihood of a monogenic disorder is low are not eligible for testing under this indication.
• Isolated craniofacial dysmorphism is not an indication for testing; exceptions to this can only be made following multidisciplinary discussion with clinical genetics.

R28 microarray testing is not a requirement prior to R27 being initiated in patients with a possible monogenic cause of a syndromic paediatric disorder in whom there are no recognisable features of a specific chromosome disorder (eg 22q11 deletion syndrome).

Test code

Test name

N/A

Target genes

Test scope

n/a

Test method/ technology

n/a

Optimal Family Structure

n/a

Eligibility Criteria

[If you are looking for R27.2, this test is no longer commissioned by NHS England. This means it is not available to order.]

Commissioning group

Core

Overlapping idications

• R14 Acutely unwell infants with a likely monogenic disorder test should be used instead where relevant where a rapid result is required and in children with onset under the age of 12 months with unexplained epilepsy. • R412 Fetal anomalies with a likely genetic cause – non urgent can be used in a fetus where insufficient DNA is available for R27 • R28 Congenital malformation and dysmorphism syndromes – microarray, should be considered prior to R27 in patients suspected of having a recognisable chromosomal disorder e.g. 22q11 deletion

Address for samples/request forms

Genetics Laboratory
5th Floor Tower Wing
Guy’s Hospital
London
SE1 9RT

Contact with queries

gst-tr.southeastglh@nhs.net

Supporting documents

n/a

Education resources

n/a

Turn around times

All our turnaround times are listed on our specific turn around page https://southeastgenomics.nhs.uk/professionals/service-turn-around-times/

Consent record

See consent guidance in test request form

Sample requirements

Sample Requirements Each sample must be sent labelled with 3 patient identifiers and must state the sample type clearly on the sample container. Sample Rejection Samples may be rejected for the following reasons: 1. Samples and request form do not show at least three identical patient identifiers 2. The sample is in the incorrect collection media 3. The request form is not sufficiently completed 4. The sample is not of sufficient volume 5. The sample is too old Sample Storage and Volume Required: 1. Peripheral blood in an EDTA tube: Adult and children 4 ml, Infants (0-2 years) 1 ml or a DNA sample (1-7µg of purified DNA). Where it is not possible to collect peripheral blood we will accept a saliva sample (please contact the lab for specific details). 2. Bone marrow sample in EDTA tube, cell count must be provided. 3. Cultured Fibroblasts in medium 4. Fresh tissue with at least 30% tumour cell content: Adequate sample sizes include 5mm x 5mm x 2mm tissue or 15mm x 2mm needle core biopsy. Multiple biopsies recommended if clinically feasible. Tissue should be embedded in OCT or preserved in RNA Later where appropriate 5. Extracted DNA , 1 μg to 7.2 μg depending on WGS pathway. Storage, sample packing and transportation: Blood and bone marrow samples should be stored at 4°C whenever possible and sent at room temperature via first-class post or courier. Tissue samples preserved in RNA Later can be shipped at room temperature, while fresh tissue samples must be shipped on ice/dry ice. All samples should arrive at the laboratory within 24 hours of collection. Patient/Clinician Instructions: N/A Factors affecting performance of test/interpretation of results: Clotted samples are unsuitable for DNA analysis. Blood Samples in incorrect anticoagulant tubes may be rejected.